From fb789b7bd8328e3301e9819b79da393290bb2af0 Mon Sep 17 00:00:00 2001
From: WPum <27683756+WPum@users.noreply.github.com>
Date: Sun, 25 Dec 2022 23:42:44 +0800
Subject: [PATCH 01/14] sync chinese readme with the english version

---
 README-ZH_CN.md | 55 +++++++++++++++++++++++++++++++------------------
 1 file changed, 35 insertions(+), 20 deletions(-)

diff --git a/README-ZH_CN.md b/README-ZH_CN.md
index 70d08a8c1..23612ce07 100644
--- a/README-ZH_CN.md
+++ b/README-ZH_CN.md
@@ -1,9 +1,9 @@
-# Trilium笔记
+# Trilium Notes
 
 [English](https://github.com/zadam/trilium/blob/master/README.md) | [Chinese](https://github.com/zadam/trilium/blob/master/README-ZH_CN.md) | [Russian](https://github.com/zadam/trilium/blob/master/README.ru.md)
 
 [![Join the chat at https://gitter.im/trilium-notes/Lobby](https://badges.gitter.im/trilium-notes/Lobby.svg)](https://gitter.im/trilium-notes/Lobby?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
-Trilium Notes是一个分层的笔记应用程序，专注于建立大型个人知识库。请参阅[屏幕截图](https://github.com/zadam/trilium/wiki/Screenshot-tour)以快速了解：
+Trilium Notes 是一个层次化的笔记应用程序，专注于建立大型个人知识库。请参阅[屏幕截图](https://github.com/zadam/trilium/wiki/Screenshot-tour)以快速了解：
 
 ![](https://raw.githubusercontent.com/wiki/zadam/trilium/images/screenshot.png)
 
@@ -14,36 +14,43 @@ Ukraine is currently suffering from Russian aggression, please consider donating
 ## 特性
 
 * 笔记可以排列成任意深的树。单个笔记可以放在树中的多个位置（请参阅[克隆](https://github.com/zadam/trilium/wiki/Cloning-notes)）
-* 丰富的所见即所得笔记编辑功能，包括带有markdown[自动格式化功能的](https://github.com/zadam/trilium/wiki/Text-notes#autoformat)表格，图像和[数学](https://github.com/zadam/trilium/wiki/Text-notes#math-support)
+* 丰富的所见即所得笔记编辑功能，包括带有 Markdown [自动格式化功能的](https://github.com/zadam/trilium/wiki/Text-notes#autoformat)表格，图像和[数学](https://github.com/zadam/trilium/wiki/Text-notes#math-support)
 * 支持编辑[使用源代码的笔记](https://github.com/zadam/trilium/wiki/Code-notes)，包括语法高亮显示
-* 笔记之间快速[导航](https://github.com/zadam/trilium/wiki/Note-navigation)，全文搜索和[笔记挂起](https://github.com/zadam/trilium/wiki/Note-hoisting)
+* 笔记之间快速[导航](https://github.com/zadam/trilium/wiki/Note-navigation)，全文搜索和[笔记聚焦](https://github.com/zadam/trilium/wiki/Note-hoisting)
 * 无缝[笔记版本控制](https://github.com/zadam/trilium/wiki/Note-revisions)
 * 笔记[属性](https://github.com/zadam/trilium/wiki/Attributes)可用于笔记组织，查询和高级[脚本编写](https://github.com/zadam/trilium/wiki/Scripts)
 * [同步](https://github.com/zadam/trilium/wiki/Synchronization)与自托管同步服务器
+  * 有一个[第三方提供的同步服务器托管服务](https://trilium.cc/paid-hosting)
+* 公开地[分享](https://github.com/zadam/trilium/wiki/Sharing)（发布）笔记到互联网
 * 具有按笔记粒度的强大的[笔记加密](https://github.com/zadam/trilium/wiki/Protected-notes)
+* 使用自带的 Excalidraw 来绘制图表（笔记类型“画布”）
 * [关系图](https://github.com/zadam/trilium/wiki/Relation-map)和[链接图](https://github.com/zadam/trilium/wiki/Link-map)，用于可视化笔记及其关系
-* [脚本](https://github.com/zadam/trilium/wiki/Scripts)-请参阅[高级展示](https://github.com/zadam/trilium/wiki/Advanced-showcases)
-* 可用性和性能均能很好地扩展至超过10万个笔记
-* 针对智能手机和平板电脑进行触摸优化的[移动前端](https://github.com/zadam/trilium/wiki/Mobile-frontend)
+* [脚本](https://github.com/zadam/trilium/wiki/Scripts) - 请参阅[高级功能展示](https://github.com/zadam/trilium/wiki/Advanced-showcases)
+* 在拥有超过 10 万条笔记时仍能保持良好的可用性和性能
+* 针对智能手机和平板电脑进行优化的[用于移动设备的前端](https://github.com/zadam/trilium/wiki/Mobile-frontend)
 * [夜间主题](https://github.com/zadam/trilium/wiki/Themes)
-* [Evernote](https://github.com/zadam/trilium/wiki/Evernote-import)和[Markdown导入导出](https://github.com/zadam/trilium/wiki/Markdown)
-* [Web Clipper](https://github.com/zadam/trilium/wiki/Web-clipper)可轻松保存Web内容
+* [Evernote](https://github.com/zadam/trilium/wiki/Evernote-import) 和 [Markdown 导入导出](https://github.com/zadam/trilium/wiki/Markdown)功能
+* 使用[网页剪藏](https://github.com/zadam/trilium/wiki/Web-clipper)轻松保存互联网上的内容
 
 ## 构建
 
-Trilium是作为桌面应用程序（Linux和Windows）或服务器上托管的Web应用程序（Linux）提供的。Mac OS桌面版本可用，但[不受支持](https://github.com/zadam/trilium/wiki/FAQ#mac-os-support)。
+Trilium 可以用作桌面应用程序（Linux 和 Windows）或服务器（Linux）上托管的 Web 应用程序。虽然有 macOS 版本的桌面应用程序，但它[不受支持](https://github.com/zadam/trilium/wiki/FAQ#mac-os-support)。
 
-* 如果要在桌面上使用Trilium，请从[最新版本](https://github.com/zadam/trilium/releases/latest)下载适用于您平台的二进制[版本](https://github.com/zadam/trilium/releases/latest)，解压缩该软件包并运行`trilium`可执行文件。
-* 如果要在服务器上安装Trilium，请遵循[此页面](https://github.com/zadam/trilium/wiki/Server-installation)。
-    * 当前仅支持（经过测试）最新的Chrome和Firefox浏览器。
+* 如果要在桌面上使用 Trilium，请从[最新版本](https://github.com/zadam/trilium/releases/latest)下载适用于您平台的二进制版本，解压缩该软件包并运行`trilium`可执行文件。
+* 如果要在服务器上安装 Trilium，请参考[此页面](https://github.com/zadam/trilium/wiki/Server-installation)。
+  * 当前仅支持（测试过）最近发布的 Chrome 和 Firefox 浏览器。
+
+Trilium 也提供 Flatpak：
+
+[<img width="240" src="https://flathub.org/assets/badges/flathub-badge-en.png">](https://flathub.org/apps/details/com.github.zadam.trilium)
 
 ## 文档
 
-[有关文档页面的完整列表，请参见Wiki。](https://github.com/zadam/trilium/wiki/)
+[有关文档页面的完整列表，请参见 Wiki。](https://github.com/zadam/trilium/wiki/)
 
-[中文Wiki在这里](https://github.com/baddate/trilium/wiki/)
+* [Wiki 的中文翻译版本](https://github.com/baddate/trilium/wiki/)
 
-您还可以阅读[个人知识库模式](https://github.com/zadam/trilium/wiki/Patterns-of-personal-knowledge-base)，以获取有关如何使用Trilium的灵感。
+您还可以阅读[个人知识库模式](https://github.com/zadam/trilium/wiki/Patterns-of-personal-knowledge-base)，以获取有关如何使用 Trilium 的灵感。
 
 ## 贡献
 
@@ -51,7 +58,7 @@ Trilium是作为桌面应用程序（Linux和Windows）或服务器上托管的W
 
 [![Open in Gitpod](https://gitpod.io/button/open-in-gitpod.svg)](https://gitpod.io/#https://github.com/zadam/trilium)
 
-或在本地克隆并运行
+或者克隆本仓库到本地，并运行
 
 ```
 npm install
@@ -60,7 +67,15 @@ npm run start-server
 
 ## 致谢
 
-* [CKEditor 5](https://github.com/ckeditor/ckeditor5) - 市场上最好的所见即所得编辑器，互动性强且聆听能力强的团队
-* [FancyTree](https://github.com/mar10/fancytree) - 一个非常丰富的关于树的库，强大的没有对手。没有它，Trilium Notes将不会如此。
+* [CKEditor 5](https://github.com/ckeditor/ckeditor5) - 市面上最好的所见即所得编辑器，拥有互动性强且聆听能力强的团队
+* [FancyTree](https://github.com/mar10/fancytree) - 一个非常丰富的关于树的库，强大到没有对手。没有它，Trilium Notes 将不会如此。
 * [CodeMirror](https://github.com/codemirror/CodeMirror) - 支持大量语言的代码编辑器
-* [jsPlumb](https://github.com/jsplumb/jsplumb)强大的可视化连接库。- 用于[关系图](https://github.com/zadam/trilium/wiki/Relation-map)和[链接图](https://github.com/zadam/trilium/wiki/Link-map)
+* [jsPlumb](https://github.com/jsplumb/jsplumb) - 强大的可视化连接库。用于[关系图](https://github.com/zadam/trilium/wiki/Relation-map)和[链接图](https://github.com/zadam/trilium/wiki/Link-map)
+
+## 捐赠
+
+你可以通过 GitHub Sponsors，[PayPal](https://paypal.me/za4am) 或者比特币 (bitcoin:bc1qv3svjn40v89mnkre5vyvs2xw6y8phaltl385d2) 来捐赠。
+
+## 许可证
+
+本程序是自由软件：你可以再发布本软件和/或修改本软件，只要你遵循 Free Software Foundation 发布的 GNU Affero General Public License 的第三版或者任何（由你选择）更晚的版本。

From affd8062e2a3afc47d9856c8a533fc7ab0226aea Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Mon, 26 Dec 2022 10:52:28 +0100
Subject: [PATCH 02/14] escape note titles in note map

---
 src/public/app/widgets/note_map.js | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/src/public/app/widgets/note_map.js b/src/public/app/widgets/note_map.js
index acacedae3..ccd659683 100644
--- a/src/public/app/widgets/note_map.js
+++ b/src/public/app/widgets/note_map.js
@@ -5,6 +5,9 @@ import hoistedNoteService from "../services/hoisted_note.js";
 import appContext from "../components/app_context.js";
 import NoteContextAwareWidget from "./note_context_aware_widget.js";
 import linkContextMenuService from "../menus/link_context_menu.js";
+import utils from "../services/utils.js";
+
+const esc = utils.escapeHtml;
 
 const TPL = `<div class="note-map-widget" style="position: relative;">
     <style>
@@ -102,7 +105,7 @@ export default class NoteMapWidget extends NoteContextAwareWidget {
                 ctx.arc(node.x, node.y, this.noteIdToSizeMap[node.id], 0, 2 * Math.PI, false);
                 ctx.fill();
             })
-            .nodeLabel(node => node.name)
+            .nodeLabel(node => esc(node.name))
             .maxZoom(7)
             .warmupTicks(30)
             .linkDirectionalArrowLength(5)
@@ -114,7 +117,7 @@ export default class NoteMapWidget extends NoteContextAwareWidget {
 
         if (this.mapType === 'link') {
             this.graph
-                .linkLabel(l => `${l.source.name} - <strong>${l.name}</strong> - ${l.target.name}`)
+                .linkLabel(l => `${esc(l.source.name)} - <strong>${esc(l.name)}</strong> - ${esc(l.target.name)}`)
                 .linkCanvasObject((link, ctx) => this.paintLink(link, ctx))
                 .linkCanvasObjectMode(() => "after");
         }

From 7a8bbdced83c3bf906feec87b97aba4959ffa7bc Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Mon, 26 Dec 2022 20:07:04 +0100
Subject: [PATCH 03/14] fix cursor in the textarea, closes #3459

---
 src/public/stylesheets/style.css | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/src/public/stylesheets/style.css b/src/public/stylesheets/style.css
index 29b621535..95dd1a0ca 100644
--- a/src/public/stylesheets/style.css
+++ b/src/public/stylesheets/style.css
@@ -987,3 +987,7 @@ button.close:hover {
     margin-top: 10px;
     margin-bottom: 10px;
 }
+
+textarea {
+    cursor: auto;
+}

From 701911b766d7508295ae64a22bd3a4183c0e3f75 Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Mon, 26 Dec 2022 23:57:31 +0100
Subject: [PATCH 04/14] release 0.58.1-beta

---
 package.json          | 2 +-
 src/services/build.js | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 529727159..6511ace5c 100644
--- a/package.json
+++ b/package.json
@@ -2,7 +2,7 @@
   "name": "trilium",
   "productName": "Trilium Notes",
   "description": "Trilium Notes",
-  "version": "0.58.0-beta",
+  "version": "0.58.1-beta",
   "license": "AGPL-3.0-only",
   "main": "electron.js",
   "bin": {
diff --git a/src/services/build.js b/src/services/build.js
index 47a0745b0..66059373c 100644
--- a/src/services/build.js
+++ b/src/services/build.js
@@ -1 +1 @@
-module.exports = { buildDate:"2022-12-24T22:09:05+01:00", buildRevision: "f08fbf7bca60fc7c727d96b10785a0c5a5f93810" };
+module.exports = { buildDate:"2022-12-26T23:57:31+01:00", buildRevision: "7a8bbdced83c3bf906feec87b97aba4959ffa7bc" };

From 4b779d7512e351147f3f5a15ba480854b4e7d9b8 Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Tue, 27 Dec 2022 09:53:25 +0100
Subject: [PATCH 05/14] small refactors in sync

---
 src/services/entity_changes.js | 59 +++++++++++++++-------------------
 src/services/sync_update.js    |  8 ++---
 2 files changed, 30 insertions(+), 37 deletions(-)

diff --git a/src/services/entity_changes.js b/src/services/entity_changes.js
index 62eabc944..a1009cd6c 100644
--- a/src/services/entity_changes.js
+++ b/src/services/entity_changes.js
@@ -8,7 +8,7 @@ const becca = require("../becca/becca");
 
 let maxEntityChangeId = 0;
 
-function addEntityChangeWithinstanceId(origEntityChange, instanceId) {
+function addEntityChangeWithInstanceId(origEntityChange, instanceId) {
     const ec = {...origEntityChange, instanceId};
 
     return addEntityChange(ec);
@@ -85,45 +85,38 @@ function cleanupEntityChangesForMissingEntities(entityName, entityPrimaryKey) {
 }
 
 function fillEntityChanges(entityName, entityPrimaryKey, condition = '') {
-    try {
-        cleanupEntityChangesForMissingEntities(entityName, entityPrimaryKey);
+    cleanupEntityChangesForMissingEntities(entityName, entityPrimaryKey);
 
-        sql.transactional(() => {
-            const entityIds = sql.getColumn(`SELECT ${entityPrimaryKey} FROM ${entityName}`
-                + (condition ? ` WHERE ${condition}` : ''));
+    sql.transactional(() => {
+        const entityIds = sql.getColumn(`SELECT ${entityPrimaryKey} FROM ${entityName}`
+            + (condition ? ` WHERE ${condition}` : ''));
 
-            let createdCount = 0;
+        let createdCount = 0;
 
-            for (const entityId of entityIds) {
-                const existingRows = sql.getValue("SELECT COUNT(1) FROM entity_changes WHERE entityName = ? AND entityId = ?", [entityName, entityId]);
+        for (const entityId of entityIds) {
+            const existingRows = sql.getValue("SELECT COUNT(1) FROM entity_changes WHERE entityName = ? AND entityId = ?", [entityName, entityId]);
 
-                // we don't want to replace existing entities (which would effectively cause full resync)
-                if (existingRows === 0) {
-                    createdCount++;
+            // we don't want to replace existing entities (which would effectively cause full resync)
+            if (existingRows === 0) {
+                createdCount++;
 
-                    const entity = becca.getEntity(entityName, entityId);
+                const entity = becca.getEntity(entityName, entityId);
 
-                    addEntityChange({
-                        entityName,
-                        entityId,
-                        hash: entity.generateHash(),
-                        isErased: false,
-                        utcDateChanged: entity.getUtcDateChanged(),
-                        isSynced: entityName !== 'options' || !!entity.isSynced
-                    });
-                }
+                addEntityChange({
+                    entityName,
+                    entityId,
+                    hash: entity.generateHash(),
+                    isErased: false,
+                    utcDateChanged: entity.getUtcDateChanged(),
+                    isSynced: entityName !== 'options' || !!entity.isSynced
+                });
             }
+        }
 
-            if (createdCount > 0) {
-                log.info(`Created ${createdCount} missing entity changes for ${entityName}.`);
-            }
-        });
-    }
-    catch (e) {
-        // this is to fix migration from 0.30 to 0.32, can be removed later
-        // see https://github.com/zadam/trilium/issues/557
-        log.error(`Filling entity changes failed for ${entityName} ${entityPrimaryKey} with error "${e.message}", continuing`);
-    }
+        if (createdCount > 0) {
+            log.info(`Created ${createdCount} missing entity changes for ${entityName}.`);
+        }
+    });
 }
 
 function fillAllEntityChanges() {
@@ -145,7 +138,7 @@ module.exports = {
     addNoteReorderingEntityChange,
     moveEntityChangeToTop,
     addEntityChange,
-    addEntityChangeWithinstanceId,
+    addEntityChangeWithInstanceId,
     fillAllEntityChanges,
     addEntityChangesForSector,
     getMaxEntityChangeId: () => maxEntityChangeId
diff --git a/src/services/sync_update.js b/src/services/sync_update.js
index 2492452e4..e46bb8eae 100644
--- a/src/services/sync_update.js
+++ b/src/services/sync_update.js
@@ -54,7 +54,7 @@ function updateNormalEntity(remoteEntityChange, entity, instanceId) {
 
             sql.execute(`DELETE FROM ${remoteEntityChange.entityName} WHERE ${primaryKey} = ?`, remoteEntityChange.entityId);
 
-            entityChangesService.addEntityChangeWithinstanceId(remoteEntityChange, instanceId);
+            entityChangesService.addEntityChangeWithInstanceId(remoteEntityChange, instanceId);
         });
 
         return true;
@@ -71,7 +71,7 @@ function updateNormalEntity(remoteEntityChange, entity, instanceId) {
         sql.transactional(() => {
             sql.replace(remoteEntityChange.entityName, entity);
 
-            entityChangesService.addEntityChangeWithinstanceId(remoteEntityChange, instanceId);
+            entityChangesService.addEntityChangeWithInstanceId(remoteEntityChange, instanceId);
         });
 
         return true;
@@ -86,7 +86,7 @@ function updateNoteReordering(entityChange, entity, instanceId) {
             sql.execute("UPDATE branches SET notePosition = ? WHERE branchId = ?", [entity[key], key]);
         }
 
-        entityChangesService.addEntityChangeWithinstanceId(entityChange, instanceId);
+        entityChangesService.addEntityChangeWithInstanceId(entityChange, instanceId);
     });
 
     return true;
@@ -119,7 +119,7 @@ function eraseEntity(entityChange, instanceId) {
 
     eventService.emit(eventService.ENTITY_DELETE_SYNCED, { entityName, entityId });
 
-    entityChangesService.addEntityChangeWithinstanceId(entityChange, instanceId);
+    entityChangesService.addEntityChangeWithInstanceId(entityChange, instanceId);
 }
 
 module.exports = {

From ecc2ed7d73a0110c3993d4bf6b4623c21f7b5f6b Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Tue, 27 Dec 2022 10:22:50 +0100
Subject: [PATCH 06/14] formatting

---
 src/services/cloning.js            |  4 +-
 src/services/consistency_checks.js | 88 +++++++++++++++---------------
 src/services/entity_changes.js     |  2 +-
 src/services/sync_update.js        | 13 +++--
 4 files changed, 54 insertions(+), 53 deletions(-)

diff --git a/src/services/cloning.js b/src/services/cloning.js
index 6a7dde1f0..8f5952ca0 100644
--- a/src/services/cloning.js
+++ b/src/services/cloning.js
@@ -35,7 +35,7 @@ function cloneNoteToNote(noteId, parentNoteId, prefix) {
         isExpanded: 0
     }).save();
 
-    log.info(`Cloned note ${noteId} to new parent note ${parentNoteId} with prefix ${prefix}`);
+    log.info(`Cloned note '${noteId}' to new parent note '${parentNoteId}' with prefix '${prefix}'`);
 
     return {
         success: true,
@@ -169,7 +169,7 @@ function cloneNoteAfter(noteId, afterBranchId) {
         isExpanded: 0
     }).save();
 
-    log.info(`Cloned note '${noteId}' into parent note '${afterNote.parentNoteId}' after note '${afterNote.noteId}', branch ${afterBranchId}`);
+    log.info(`Cloned note '${noteId}' into parent note '${afterNote.parentNoteId}' after note '${afterNote.noteId}', branch '${afterBranchId}'`);
 
     return { success: true, branchId: branch.branchId };
 }
diff --git a/src/services/consistency_checks.js b/src/services/consistency_checks.js
index dc529b926..6c23a71a1 100644
--- a/src/services/consistency_checks.js
+++ b/src/services/consistency_checks.js
@@ -12,7 +12,7 @@ const Branch = require('../becca/entities/branch');
 const noteRevisionService = require('./note_revisions');
 const becca = require("../becca/becca");
 const utils = require("../services/utils");
-const {sanitizeAttributeName} = require("./sanitize_attribute_name.js");
+const {sanitizeAttributeName} = require("./sanitize_attribute_name");
 const noteTypes = require("../services/note_types").getNoteTypeNames();
 
 class ConsistencyChecks {
@@ -72,7 +72,7 @@ class ConsistencyChecks {
                         return true;
                     }
                     else {
-                        logError(`Tree cycle detected at parent-child relationship: ${parentNoteId} - ${noteId}, whole path: ${path}`);
+                        logError(`Tree cycle detected at parent-child relationship: '${parentNoteId}' - '${noteId}', whole path: '${path}'`);
 
                         this.unrecoveredConsistencyErrors = true;
                     }
@@ -133,9 +133,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Branch ${branchId} has been deleted since it references missing note ${noteId}`);
+                    logFix(`Branch '${branchId}' has been deleted since it references missing note '${noteId}'`);
                 } else {
-                    logError(`Branch ${branchId} references missing note ${noteId}`);
+                    logError(`Branch '${branchId}' references missing note '${noteId}'`);
                 }
             });
 
@@ -154,9 +154,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Branch ${branchId} was set to root parent since it was referencing missing parent note ${parentNoteId}`);
+                    logFix(`Branch '${branchId}' was set to root parent since it was referencing missing parent note '${parentNoteId}'`);
                 } else {
-                    logError(`Branch ${branchId} references missing parent note ${parentNoteId}`);
+                    logError(`Branch '${branchId}' references missing parent note '${parentNoteId}'`);
                 }
             });
 
@@ -173,9 +173,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Attribute ${attributeId} has been deleted since it references missing source note ${noteId}`);
+                    logFix(`Attribute '${attributeId}' has been deleted since it references missing source note '${noteId}'`);
                 } else {
-                    logError(`Attribute ${attributeId} references missing source note ${noteId}`);
+                    logError(`Attribute '${attributeId}' references missing source note '${noteId}'`);
                 }
             });
 
@@ -193,9 +193,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Relation ${attributeId} has been deleted since it references missing note ${noteId}`)
+                    logFix(`Relation '${attributeId}' has been deleted since it references missing note '${noteId}'`)
                 } else {
-                    logError(`Relation ${attributeId} references missing note ${noteId}`)
+                    logError(`Relation '${attributeId}' references missing note '${noteId}'`)
                 }
             });
     }
@@ -220,9 +220,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Branch ${branchId} has been deleted since associated note ${noteId} is deleted.`);
+                    logFix(`Branch '${branchId}' has been deleted since associated note '${noteId}' is deleted.`);
                 } else {
-                    logError(`Branch ${branchId} is not deleted even though associated note ${noteId} is deleted.`)
+                    logError(`Branch '${branchId}' is not deleted even though associated note '${noteId}' is deleted.`)
                 }
             });
 
@@ -240,9 +240,9 @@ class ConsistencyChecks {
 
                 this.reloadNeeded = true;
 
-                logFix(`Branch ${branchId} has been deleted since associated parent note ${parentNoteId} is deleted.`);
+                logFix(`Branch '${branchId}' has been deleted since associated parent note '${parentNoteId}' is deleted.`);
             } else {
-                logError(`Branch ${branchId} is not deleted even though associated parent note ${parentNoteId} is deleted.`)
+                logError(`Branch '${branchId}' is not deleted even though associated parent note '${parentNoteId}' is deleted.`)
             }
         });
 
@@ -262,9 +262,9 @@ class ConsistencyChecks {
 
                 this.reloadNeeded = true;
 
-                logFix(`Created missing branch ${branch.branchId} for note ${noteId}`);
+                logFix(`Created missing branch '${branch.branchId}' for note '${noteId}'`);
             } else {
-                logError(`No undeleted branch found for note ${noteId}`);
+                logError(`No undeleted branch found for note '${noteId}'`);
             }
         });
 
@@ -296,12 +296,12 @@ class ConsistencyChecks {
                     for (const branch of branches.slice(1)) {
                         branch.markAsDeleted();
 
-                        logFix(`Removing branch ${branch.branchId} since it's parent-child duplicate of branch ${origBranch.branchId}`);
+                        logFix(`Removing branch '${branch.branchId}' since it's parent-child duplicate of branch '${origBranch.branchId}'`);
                     }
 
                     this.reloadNeeded = true;
                 } else {
-                    logError(`Duplicate branches for note ${noteId} and parent ${parentNoteId}`);
+                    logError(`Duplicate branches for note '${noteId}' and parent '${parentNoteId}'`);
                 }
             });
     }
@@ -322,9 +322,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Note ${noteId} type has been change to file since it had invalid type=${type}`)
+                    logFix(`Note '${noteId}' type has been change to file since it had invalid type '${type}'`)
                 } else {
-                    logError(`Note ${noteId} has invalid type=${type}`);
+                    logError(`Note '${noteId}' has invalid type '${type}'`);
                 }
             });
 
@@ -361,9 +361,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Note ${noteId} content was set to empty string since there was no corresponding row`);
+                    logFix(`Note '${noteId}' content was set to empty string since there was no corresponding row`);
                 } else {
-                    logError(`Note ${noteId} content row does not exist`);
+                    logError(`Note '${noteId}' content row does not exist`);
                 }
             });
 
@@ -385,9 +385,9 @@ class ConsistencyChecks {
 
                         this.reloadNeeded = true;
 
-                        logFix(`Note ${noteId} content was set to "${blankContent}" since it was null even though it is not deleted`);
+                        logFix(`Note '${noteId}' content was set to '${blankContent}' since it was null even though it is not deleted`);
                     } else {
-                        logError(`Note ${noteId} content is null even though it is not deleted`);
+                        logError(`Note '${noteId}' content is null even though it is not deleted`);
                     }
                 });
         }
@@ -404,9 +404,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Note revision content ${noteRevisionId} was created and set to erased since it did not exist.`);
+                    logFix(`Note revision content '${noteRevisionId}' was created and set to erased since it did not exist.`);
                 } else {
-                    logError(`Note revision content ${noteRevisionId} does not exist`);
+                    logError(`Note revision content '${noteRevisionId}' does not exist`);
                 }
             });
 
@@ -431,12 +431,12 @@ class ConsistencyChecks {
                         branch.parentNoteId = 'root';
                         branch.save();
 
-                        logFix(`Child branch ${branch.branchId} has been moved to root since it was a child of a search note ${parentNoteId}`)
+                        logFix(`Child branch '${branch.branchId}' has been moved to root since it was a child of a search note '${parentNoteId}'`)
                     }
 
                     this.reloadNeeded = true;
                 } else {
-                    logError(`Search note ${parentNoteId} has children`);
+                    logError(`Search note '${parentNoteId}' has children`);
                 }
             });
 
@@ -453,9 +453,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Removed relation ${relation.attributeId} of name "${relation.name} with empty target.`);
+                    logFix(`Removed relation '${relation.attributeId}' of name '${relation.name}' with empty target.`);
                 } else {
-                    logError(`Relation ${attributeId} has empty target.`);
+                    logError(`Relation '${attributeId}' has empty target.`);
                 }
             });
 
@@ -474,9 +474,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Attribute ${attributeId} type was changed to label since it had invalid type '${type}'`);
+                    logFix(`Attribute '${attributeId}' type was changed to label since it had invalid type '${type}'`);
                 } else {
-                    logError(`Attribute ${attributeId} has invalid type '${type}'`);
+                    logError(`Attribute '${attributeId}' has invalid type '${type}'`);
                 }
             });
 
@@ -494,9 +494,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Removed attribute ${attributeId} because owning note ${noteId} is also deleted.`);
+                    logFix(`Removed attribute '${attributeId}' because owning note '${noteId}' is also deleted.`);
                 } else {
-                    logError(`Attribute ${attributeId} is not deleted even though owning note ${noteId} is deleted.`);
+                    logError(`Attribute '${attributeId}' is not deleted even though owning note '${noteId}' is deleted.`);
                 }
             });
 
@@ -515,9 +515,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Removed attribute ${attributeId} because target note ${targetNoteId} is also deleted.`);
+                    logFix(`Removed attribute '${attributeId}' because target note '${targetNoteId}' is also deleted.`);
                 } else {
-                    logError(`Attribute ${attributeId} is not deleted even though target note ${targetNoteId} is deleted.`);
+                    logError(`Attribute '${attributeId}' is not deleted even though target note '${targetNoteId}' is deleted.`);
                 }
             });
     }
@@ -545,9 +545,9 @@ class ConsistencyChecks {
                         isSynced: entityName !== 'options' || entity.isSynced
                     });
 
-                    logFix(`Created missing entity change for entityName=${entityName}, entityId=${entityId}`);
+                    logFix(`Created missing entity change for entityName '${entityName}', entityId '${entityId}'`);
                 } else {
-                    logError(`Missing entity change for entityName=${entityName}, entityId=${entityId}`);
+                    logError(`Missing entity change for entityName '${entityName}', entityId '${entityId}'`);
                 }
             });
 
@@ -565,9 +565,9 @@ class ConsistencyChecks {
                     if (this.autoFix) {
                         sql.execute("DELETE FROM entity_changes WHERE entityName = ? AND entityId = ?", [entityName, entityId]);
 
-                        logFix(`Deleted extra entity change id=${id}, entityName=${entityName}, entityId=${entityId}`);
+                        logFix(`Deleted extra entity change id '${id}', entityName '${entityName}', entityId '${entityId}'`);
                     } else {
-                        logError(`Unrecognized entity change id=${id}, entityName=${entityName}, entityId=${entityId}`);
+                        logError(`Unrecognized entity change id '${id}', entityName '${entityName}', entityId '${entityId}'`);
                     }
                 });
 
@@ -586,9 +586,9 @@ class ConsistencyChecks {
 
                     this.reloadNeeded = true;
 
-                    logFix(`Erasing entityName=${entityName}, entityId=${entityId} since entity change id=${id} has it as erased.`);
+                    logFix(`Erasing entityName '${entityName}', entityId '${entityId}' since entity change id '${id}' has it as erased.`);
                 } else {
-                    logError(`Entity change id=${id} has entityName=${entityName}, entityId=${entityId} as erased, but it's not.`);
+                    logError(`Entity change id '${id}' has entityName '${entityName}', entityId '${entityId}' as erased, but it's not.`);
                 }
             });
     }
@@ -621,12 +621,12 @@ class ConsistencyChecks {
                     this.fixedIssues = true;
                     this.reloadNeeded = true;
 
-                    logFix(`Renamed incorrectly named attributes "${origName}" to ${fixedName}`);
+                    logFix(`Renamed incorrectly named attributes '${origName}' to '${fixedName}'`);
                 }
                 else {
                     this.unrecoveredConsistencyErrors = true;
 
-                    logFix(`There are incorrectly named attributes "${origName}"`);
+                    logFix(`There are incorrectly named attributes '${origName}'`);
                 }
             }
         }
diff --git a/src/services/entity_changes.js b/src/services/entity_changes.js
index a1009cd6c..c83b47c06 100644
--- a/src/services/entity_changes.js
+++ b/src/services/entity_changes.js
@@ -71,7 +71,7 @@ function addEntityChangesForSector(entityName, sector) {
         }
     });
 
-    log.info(`Added sector ${sector} of ${entityName} to sync queue in ${Date.now() - startTime}ms.`);
+    log.info(`Added sector ${sector} of '${entityName}' to sync queue in ${Date.now() - startTime}ms.`);
 }
 
 function cleanupEntityChangesForMissingEntities(entityName, entityPrimaryKey) {
diff --git a/src/services/sync_update.js b/src/services/sync_update.js
index e46bb8eae..4f0417d15 100644
--- a/src/services/sync_update.js
+++ b/src/services/sync_update.js
@@ -42,7 +42,7 @@ function updateEntity(entityChange, entityRow, instanceId) {
     }
 }
 
-function updateNormalEntity(remoteEntityChange, entity, instanceId) {
+function updateNormalEntity(remoteEntityChange, remoteEntityRow, instanceId) {
     const localEntityChange = sql.getRow(`
         SELECT utcDateChanged, hash, isErased
         FROM entity_changes 
@@ -65,11 +65,11 @@ function updateNormalEntity(remoteEntityChange, entity, instanceId) {
         || localEntityChange.hash !== remoteEntityChange.hash // sync error, we should still update
     ) {
         if (['note_contents', 'note_revision_contents'].includes(remoteEntityChange.entityName)) {
-            entity.content = handleContent(entity.content);
+            remoteEntityRow.content = handleContent(remoteEntityRow.content);
         }
 
         sql.transactional(() => {
-            sql.replace(remoteEntityChange.entityName, entity);
+            sql.replace(remoteEntityChange.entityName, remoteEntityRow);
 
             entityChangesService.addEntityChangeWithInstanceId(remoteEntityChange, instanceId);
         });
@@ -93,8 +93,9 @@ function updateNoteReordering(entityChange, entity, instanceId) {
 }
 
 function handleContent(content) {
-    // we always use Buffer object which is different from normal saving - there we use simple string type for "string notes"
-    // the problem is that in general it's not possible to whether a note_content is string note or note (syncs can arrive out of order)
+    // we always use Buffer object which is different from normal saving - there we use simple string type for
+    // "string notes". The problem is that in general it's not possible to detect whether a note_content
+    // is string note or note (syncs can arrive out of order)
     content = content === null ? null : Buffer.from(content, 'base64');
 
     if (content && content.byteLength === 0) {
@@ -109,7 +110,7 @@ function eraseEntity(entityChange, instanceId) {
     const {entityName, entityId} = entityChange;
 
     if (!["notes", "note_contents", "branches", "attributes", "note_revisions", "note_revision_contents"].includes(entityName)) {
-        log.error(`Cannot erase entity ${entityName}, id ${entityId}`);
+        log.error(`Cannot erase entity '${entityName}', id '${entityId}'`);
         return;
     }
 

From 0758c829836e3aefd9e095fef1cf030f9b9569de Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Tue, 27 Dec 2022 14:44:28 +0100
Subject: [PATCH 07/14] hidden subtree is now built as "predictable" to avoid
 duplicating it in sync

---
 db/migrations/0210__consistency_checks.js     | 20 ++++++
 db/migrations/0211__rename_branchIds.sql      | 12 ++++
 ...2__delete_all_attributes_of_named_notes.js | 21 ++++++
 src/becca/entities/abstract_entity.js         |  7 +-
 src/becca/entities/branch.js                  | 36 ++++++----
 src/becca/entities/note.js                    | 16 +++--
 src/etapi/branches.js                         | 15 ++---
 src/routes/api/attributes.js                  |  2 +-
 src/services/app_info.js                      |  4 +-
 src/services/consistency_checks.js            | 32 +++++----
 src/services/hidden_subtree.js                | 66 ++++++++++++-------
 src/services/notes.js                         |  3 +
 src/services/scheduler.js                     |  4 +-
 13 files changed, 169 insertions(+), 69 deletions(-)
 create mode 100644 db/migrations/0210__consistency_checks.js
 create mode 100644 db/migrations/0211__rename_branchIds.sql
 create mode 100644 db/migrations/0212__delete_all_attributes_of_named_notes.js

diff --git a/db/migrations/0210__consistency_checks.js b/db/migrations/0210__consistency_checks.js
new file mode 100644
index 000000000..f49fd0fd4
--- /dev/null
+++ b/db/migrations/0210__consistency_checks.js
@@ -0,0 +1,20 @@
+module.exports = async () => {
+    const cls = require("../../src/services/cls");
+    const beccaLoader = require("../../src/becca/becca_loader");
+    const log = require("../../src/services/log");
+    const consistencyChecks = require("../../src/services/consistency_checks");
+
+    await cls.init(async () => {
+        beccaLoader.load();
+
+        try {
+            // precaution before running 211 which might produce unique constraint problems if the DB was not consistent
+            consistencyChecks.runOnDemandChecksWithoutExclusiveLock(true);
+        }
+        catch (e) {
+            // consistency checks might start failing in the future if there's some incompatible migration down the road
+            // we can optimistically assume the DB is consistent and still continue
+            log.error(`Consistency checks failed in migration 0210: ${e.message} ${e.stack}`);
+        }
+    });
+};
diff --git a/db/migrations/0211__rename_branchIds.sql b/db/migrations/0211__rename_branchIds.sql
new file mode 100644
index 000000000..a5dd8a5d3
--- /dev/null
+++ b/db/migrations/0211__rename_branchIds.sql
@@ -0,0 +1,12 @@
+-- case based on isDeleted is needed, otherwise 2 branches (1 deleted, 1 not) might get the same ID
+UPDATE entity_changes SET entityId = (
+    SELECT
+        CASE isDeleted
+            WHEN 0 THEN parentNoteId || '_' || noteId
+            WHEN 1 THEN branchId
+        END
+    FROM branches WHERE branchId = entityId
+)
+WHERE entityName = 'branches';
+
+UPDATE branches SET branchId = parentNoteId || '_' || noteId WHERE isDeleted = 0;
diff --git a/db/migrations/0212__delete_all_attributes_of_named_notes.js b/db/migrations/0212__delete_all_attributes_of_named_notes.js
new file mode 100644
index 000000000..47ddb9114
--- /dev/null
+++ b/db/migrations/0212__delete_all_attributes_of_named_notes.js
@@ -0,0 +1,21 @@
+module.exports = () => {
+    const cls = require("../../src/services/cls");
+    const beccaLoader = require("../../src/becca/becca_loader");
+    const becca = require("../../src/becca/becca");
+
+    cls.init(() => {
+        beccaLoader.load();
+
+        const hidden = becca.getNote("_hidden");
+
+        for (const noteId of hidden.getSubtreeNoteIds({includeHidden: true})) {
+            if (noteId.startsWith("_")) { // is "named" note
+                const note = becca.getNote(noteId);
+
+                for (const attr of note.getOwnedAttributes()) {
+                    attr.markAsDeleted("0212__delete_all_attributes_of_named_notes");
+                }
+            }
+        }
+    });
+};
diff --git a/src/becca/entities/abstract_entity.js b/src/becca/entities/abstract_entity.js
index 8c1b7b755..8d28604ca 100644
--- a/src/becca/entities/abstract_entity.js
+++ b/src/becca/entities/abstract_entity.js
@@ -46,7 +46,10 @@ class AbstractEntity {
         return this.utcDateModified || this.utcDateCreated;
     }
 
-    /** @protected */
+    /**
+     * @protected
+     * @returns {Becca}
+     */
     get becca() {
         if (!becca) {
             becca = require('../becca');
@@ -75,7 +78,7 @@ class AbstractEntity {
     /**
      * Saves entity - executes SQL, but doesn't commit the transaction on its own
      *
-     * @returns {AbstractEntity}
+     * @returns {this}
      */
     save() {
         const entityName = this.constructor.entityName;
diff --git a/src/becca/entities/branch.js b/src/becca/entities/branch.js
index 127c58b3c..27f6babe9 100644
--- a/src/becca/entities/branch.js
+++ b/src/becca/entities/branch.js
@@ -78,7 +78,7 @@ class Branch extends AbstractEntity {
             childNote.parentBranches.push(this);
         }
 
-        if (this.branchId === 'root') {
+        if (this.noteId === 'root') {
             return;
         }
 
@@ -165,8 +165,7 @@ class Branch extends AbstractEntity {
             }
         }
 
-        if (this.branchId === 'root'
-            || this.noteId === 'root'
+        if (this.noteId === 'root'
             || this.noteId === cls.getHoistedNoteId()) {
 
             throw new Error("Can't delete root or hoisted branch/note");
@@ -209,11 +208,19 @@ class Branch extends AbstractEntity {
     }
 
     beforeSaving() {
+        if (!this.noteId || !this.parentNoteId) {
+            throw new Error(`noteId and parentNoteId are mandatory properties for Branch`);
+        }
+
+        this.branchId = `${this.parentNoteId}_${this.noteId}`;
+
         if (this.notePosition === undefined || this.notePosition === null) {
             let maxNotePos = 0;
 
             for (const childBranch of this.parentNote.getChildBranches()) {
-                if (maxNotePos < childBranch.notePosition && childBranch.noteId !== '_hidden') {
+                if (maxNotePos < childBranch.notePosition
+                    && childBranch.noteId !== '_hidden' // hidden has very large notePosition to always stay last
+                ) {
                     maxNotePos = childBranch.notePosition;
                 }
             }
@@ -246,13 +253,20 @@ class Branch extends AbstractEntity {
     }
 
     createClone(parentNoteId, notePosition) {
-        return new Branch({
-            noteId: this.noteId,
-            parentNoteId: parentNoteId,
-            notePosition: notePosition,
-            prefix: this.prefix,
-            isExpanded: this.isExpanded
-        });
+        const existingBranch = this.becca.getBranchFromChildAndParent(this.noteId, parentNoteId);
+
+        if (existingBranch) {
+            existingBranch.notePosition = notePosition;
+            return existingBranch;
+        } else {
+            return new Branch({
+                noteId: this.noteId,
+                parentNoteId: parentNoteId,
+                notePosition: notePosition,
+                prefix: this.prefix,
+                isExpanded: this.isExpanded
+            });
+        }
     }
 }
 
diff --git a/src/becca/entities/note.js b/src/becca/entities/note.js
index 58ecf51fb..ae1b1df52 100644
--- a/src/becca/entities/note.js
+++ b/src/becca/entities/note.js
@@ -945,13 +945,14 @@ class Note extends AbstractEntity {
         };
     }
 
-    /** @returns {String[]} */
-    getSubtreeNoteIds({includeArchived = true, resolveSearch = false} = {}) {
-        return this.getSubtree({includeArchived, resolveSearch})
+    /** @returns {String[]} - includes the subtree node as well */
+    getSubtreeNoteIds({includeArchived = true, includeHidden = false, resolveSearch = false} = {}) {
+        return this.getSubtree({includeArchived, includeHidden, resolveSearch})
             .notes
             .map(note => note.noteId);
     }
 
+    /** @deprecated use getSubtreeNoteIds() instead */
     getDescendantNoteIds() {
         return this.getSubtreeNoteIds();
     }
@@ -1171,7 +1172,8 @@ class Note extends AbstractEntity {
      * @param {string} type - attribute type (label / relation)
      * @param {string} name - name of the attribute, not including the leading ~/#
      * @param {string} [value] - value of the attribute - text for labels, target note ID for relations; optional.
-     *
+     * @param {boolean} [isInheritable=false]
+     * @param {int} [position]
      * @return {Attribute}
      */
     addAttribute(type, name, value = "", isInheritable = false, position = 1000) {
@@ -1192,7 +1194,7 @@ class Note extends AbstractEntity {
      *
      * @param {string} name - name of the label, not including the leading #
      * @param {string} [value] - text value of the label; optional
-     *
+     * @param {boolean} [isInheritable=false]
      * @return {Attribute}
      */
     addLabel(name, value = "", isInheritable = false) {
@@ -1204,8 +1206,8 @@ class Note extends AbstractEntity {
      * returned.
      *
      * @param {string} name - name of the relation, not including the leading ~
-     * @param {string} value - ID of the target note of the relation
-     *
+     * @param {string} targetNoteId
+     * @param {boolean} [isInheritable=false]
      * @return {Attribute}
      */
     addRelation(name, targetNoteId, isInheritable = false) {
diff --git a/src/etapi/branches.js b/src/etapi/branches.js
index bac449322..ba06afee1 100644
--- a/src/etapi/branches.js
+++ b/src/etapi/branches.js
@@ -35,15 +35,14 @@ function register(router) {
             existing.save();
 
             return res.status(200).json(mappers.mapBranchToPojo(existing));
-        }
+        } else {
+            try {
+                const branch = new Branch(params).save();
 
-        try {
-            const branch = new Branch(params).save();
-
-            res.status(201).json(mappers.mapBranchToPojo(branch));
-        }
-        catch (e) {
-            throw new eu.EtapiError(400, eu.GENERIC_CODE, e.message);
+                res.status(201).json(mappers.mapBranchToPojo(branch));
+            } catch (e) {
+                throw new eu.EtapiError(400, eu.GENERIC_CODE, e.message);
+            }
         }
     });
 
diff --git a/src/routes/api/attributes.js b/src/routes/api/attributes.js
index 54ef7a39f..cb59239a9 100644
--- a/src/routes/api/attributes.js
+++ b/src/routes/api/attributes.js
@@ -172,7 +172,7 @@ function updateNoteAttributes(req) {
             continue;
         }
 
-        // no existing attribute has been matched so we need to create a new one
+        // no existing attribute has been matched, so we need to create a new one
         // type, name and isInheritable are immutable so even if there is an attribute with matching type & name, we need to create a new one and delete the former one
 
         note.addAttribute(incAttr.type, incAttr.name, incAttr.value, incAttr.isInheritable, position);
diff --git a/src/services/app_info.js b/src/services/app_info.js
index eba845c1e..4a8f50158 100644
--- a/src/services/app_info.js
+++ b/src/services/app_info.js
@@ -4,8 +4,8 @@ const build = require('./build');
 const packageJson = require('../../package');
 const {TRILIUM_DATA_DIR} = require('./data_dir');
 
-const APP_DB_VERSION = 209;
-const SYNC_VERSION = 28;
+const APP_DB_VERSION = 212;
+const SYNC_VERSION = 29;
 const CLIPPER_PROTOCOL_VERSION = "1.0";
 
 module.exports = {
diff --git a/src/services/consistency_checks.js b/src/services/consistency_checks.js
index 6c23a71a1..85e401da9 100644
--- a/src/services/consistency_checks.js
+++ b/src/services/consistency_checks.js
@@ -144,7 +144,7 @@ class ConsistencyChecks {
                     FROM branches
                       LEFT JOIN notes ON notes.noteId = branches.parentNoteId
                     WHERE branches.isDeleted = 0
-                      AND branches.branchId != 'root'
+                      AND branches.noteId != 'root'
                       AND notes.noteId IS NULL`,
             ({branchId, parentNoteId}) => {
                 if (this.autoFix) {
@@ -670,7 +670,7 @@ class ConsistencyChecks {
         this.findSyncIssues();
 
         // root branch should always be expanded
-        sql.execute("UPDATE branches SET isExpanded = 1 WHERE branchId = 'root'");
+        sql.execute("UPDATE branches SET isExpanded = 1 WHERE noteId = 'root'");
 
         if (!this.unrecoveredConsistencyErrors) {
             // we run this only if basic checks passed since this assumes basic data consistency
@@ -701,13 +701,7 @@ class ConsistencyChecks {
         let elapsedTimeMs;
 
         await syncMutexService.doExclusively(() => {
-            const startTimeMs = Date.now();
-
-            this.runDbDiagnostics();
-
-            this.runAllChecksAndFixers();
-
-            elapsedTimeMs = Date.now() - startTimeMs;
+            elapsedTimeMs = this.runChecksInner();
         });
 
         if (this.unrecoveredConsistencyErrors) {
@@ -721,6 +715,16 @@ class ConsistencyChecks {
             );
         }
     }
+
+    runChecksInner() {
+        const startTimeMs = Date.now();
+
+        this.runDbDiagnostics();
+
+        this.runAllChecksAndFixers();
+
+        return Date.now() - startTimeMs;
+    }
 }
 
 function getBlankContent(isProtected, type, mime) {
@@ -750,9 +754,14 @@ function runPeriodicChecks() {
     consistencyChecks.runChecks();
 }
 
-function runOnDemandChecks(autoFix) {
+async function runOnDemandChecks(autoFix) {
     const consistencyChecks = new ConsistencyChecks(autoFix);
-    consistencyChecks.runChecks();
+    await consistencyChecks.runChecks();
+}
+
+function runOnDemandChecksWithoutExclusiveLock(autoFix) {
+    const consistencyChecks = new ConsistencyChecks(autoFix);
+    consistencyChecks.runChecksInner();
 }
 
 function runEntityChangesChecks() {
@@ -769,5 +778,6 @@ sqlInit.dbReady.then(() => {
 
 module.exports = {
     runOnDemandChecks,
+    runOnDemandChecksWithoutExclusiveLock,
     runEntityChangesChecks
 };
diff --git a/src/services/hidden_subtree.js b/src/services/hidden_subtree.js
index 4580a3e14..2029c2fa2 100644
--- a/src/services/hidden_subtree.js
+++ b/src/services/hidden_subtree.js
@@ -1,5 +1,6 @@
 const becca = require("../becca/becca");
 const noteService = require("./notes");
+const Attribute = require("../becca/entities/attribute.js");
 
 const LBTPL_ROOT = "_lbTplRoot";
 const LBTPL_BASE = "_lbTplBase";
@@ -10,6 +11,12 @@ const LBTPL_BUILTIN_WIDGET = "_lbTplBuiltinWidget";
 const LBTPL_SPACER = "_lbTplSpacer";
 const LBTPL_CUSTOM_WIDGET = "_lbTplCustomWidget";
 
+/*
+ * Hidden subtree is generated as a "predictable structure" which means that it avoids generating random IDs to always
+ * produce same structure. This is needed because it is run on multiple instances in the sync cluster which might produce
+ * duplicate subtrees. This way, all instances will generate the same structure with same IDs.
+ */
+
 const HIDDEN_SUBTREE_DEFINITION = {
     id: '_hidden',
     title: 'Hidden Notes',
@@ -239,12 +246,6 @@ function checkHiddenSubtreeRecursively(parentNoteId, item) {
     let note = becca.notes[item.id];
     let branch = becca.branches[item.id];
 
-    const attrs = [...(item.attributes || [])];
-
-    if (item.icon) {
-        attrs.push({ type: 'label', name: 'iconClass', value: `bx ${item.icon}` });
-    }
-
     if (!note) {
         ({note, branch} = noteService.createNewNote({
             noteId: item.id,
@@ -254,27 +255,33 @@ function checkHiddenSubtreeRecursively(parentNoteId, item) {
             content: '',
             ignoreForbiddenParents: true
         }));
+    }
 
-        if (item.type === 'launcher') {
-            if (item.command) {
-                attrs.push({ type: 'relation', name: 'template', value: LBTPL_COMMAND });
-                attrs.push({ type: 'label', name: 'command', value: item.command });
-            } else if (item.builtinWidget) {
-                if (item.builtinWidget === 'spacer') {
-                    attrs.push({ type: 'relation', name: 'template', value: LBTPL_SPACER });
-                    attrs.push({ type: 'label', name: 'baseSize', value: item.baseSize });
-                    attrs.push({ type: 'label', name: 'growthFactor', value: item.growthFactor });
-                } else {
-                    attrs.push({ type: 'relation', name: 'template', value: LBTPL_BUILTIN_WIDGET });
-                }
+    const attrs = [...(item.attributes || [])];
 
-                attrs.push({ type: 'label', name: 'builtinWidget', value: item.builtinWidget });
-             } else if (item.targetNoteId) {
-                attrs.push({ type: 'relation', name: 'template', value: LBTPL_NOTE_LAUNCHER });
-                attrs.push({ type: 'relation', name: 'target', value: item.targetNoteId });
+    if (item.icon) {
+        attrs.push({ type: 'label', name: 'iconClass', value: `bx ${item.icon}` });
+    }
+
+    if (item.type === 'launcher') {
+        if (item.command) {
+            attrs.push({ type: 'relation', name: 'template', value: LBTPL_COMMAND });
+            attrs.push({ type: 'label', name: 'command', value: item.command });
+        } else if (item.builtinWidget) {
+            if (item.builtinWidget === 'spacer') {
+                attrs.push({ type: 'relation', name: 'template', value: LBTPL_SPACER });
+                attrs.push({ type: 'label', name: 'baseSize', value: item.baseSize });
+                attrs.push({ type: 'label', name: 'growthFactor', value: item.growthFactor });
             } else {
-                throw new Error(`No action defined for launcher ${JSON.stringify(item)}`);
+                attrs.push({ type: 'relation', name: 'template', value: LBTPL_BUILTIN_WIDGET });
             }
+
+            attrs.push({ type: 'label', name: 'builtinWidget', value: item.builtinWidget });
+        } else if (item.targetNoteId) {
+            attrs.push({ type: 'relation', name: 'template', value: LBTPL_NOTE_LAUNCHER });
+            attrs.push({ type: 'relation', name: 'target', value: item.targetNoteId });
+        } else {
+            throw new Error(`No action defined for launcher ${JSON.stringify(item)}`);
         }
     }
 
@@ -299,8 +306,17 @@ function checkHiddenSubtreeRecursively(parentNoteId, item) {
     }
 
     for (const attr of attrs) {
-        if (!note.hasAttribute(attr.type, attr.name)) {
-            note.addAttribute(attr.type, attr.name, attr.value);
+        const attrId = note.noteId + "_" + attr.type.charAt(0) + attr.name;
+
+        if (!note.getAttributes().find(attr => attr.attributeId === attrId)) {console.log("EEEEE");
+            new Attribute({
+                attributeId: attrId,
+                noteId: note.noteId,
+                type: attr.type,
+                name: attr.name,
+                value: attr.value,
+                isInheritable: false
+            }).save();
         }
     }
 
diff --git a/src/services/notes.js b/src/services/notes.js
index 21e858861..95dff2ec3 100644
--- a/src/services/notes.js
+++ b/src/services/notes.js
@@ -155,6 +155,9 @@ function createNewNote(params) {
                 cls.disableEntityEvents();
             }
 
+            // TODO: think about what can happen if the note already exists with the forced ID
+            //       I guess on DB it's going to be fine, but becca references between entities
+            //       might get messed up (two Note instance for the same ID existing in the references)
             note = new Note({
                 noteId: params.noteId, // optionally can force specific noteId
                 title: params.title,
diff --git a/src/services/scheduler.js b/src/services/scheduler.js
index 70dc23589..9897f5642 100644
--- a/src/services/scheduler.js
+++ b/src/services/scheduler.js
@@ -51,9 +51,9 @@ function runNotesWithLabel(runAttrValue) {
 }
 
 sqlInit.dbReady.then(() => {
-    if (!process.env.TRILIUM_SAFE_MODE) {
-        cls.init(() => hiddenSubtreeService.checkHiddenSubtree());
+    cls.init(() => hiddenSubtreeService.checkHiddenSubtree());
 
+    if (!process.env.TRILIUM_SAFE_MODE) {
         setTimeout(cls.wrap(() => runNotesWithLabel('backendStartup')), 10 * 1000);
 
         setInterval(cls.wrap(() => runNotesWithLabel('hourly')), 3600 * 1000);

From c177d2b97b3503e05bf573470cb050d905a9e980 Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Tue, 27 Dec 2022 14:52:32 +0100
Subject: [PATCH 08/14] fix migration

---
 db/migrations/0211__rename_branchIds.sql | 6 +++---
 src/services/migration.js                | 3 ++-
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/db/migrations/0211__rename_branchIds.sql b/db/migrations/0211__rename_branchIds.sql
index a5dd8a5d3..be18ec00c 100644
--- a/db/migrations/0211__rename_branchIds.sql
+++ b/db/migrations/0211__rename_branchIds.sql
@@ -1,12 +1,12 @@
 -- case based on isDeleted is needed, otherwise 2 branches (1 deleted, 1 not) might get the same ID
-UPDATE entity_changes SET entityId = (
+UPDATE entity_changes SET entityId = COALESCE((
     SELECT
         CASE isDeleted
             WHEN 0 THEN parentNoteId || '_' || noteId
             WHEN 1 THEN branchId
         END
     FROM branches WHERE branchId = entityId
-)
-WHERE entityName = 'branches';
+), entityId)
+WHERE entityName = 'branches' AND isErased = 0;
 
 UPDATE branches SET branchId = parentNoteId || '_' || noteId WHERE isDeleted = 0;
diff --git a/src/services/migration.js b/src/services/migration.js
index a9e5d1799..f73b0f3e2 100644
--- a/src/services/migration.js
+++ b/src/services/migration.js
@@ -62,9 +62,10 @@ async function migrate() {
                 log.info(`Migration to version ${mig.dbVersion} has been successful.`);
             } catch (e) {
                 log.error(`error during migration to version ${mig.dbVersion}: ${e.stack}`);
-                log.error("migration failed, crashing hard"); // this is not very user friendly :-/
+                log.error("migration failed, crashing hard"); // this is not very user-friendly :-/
 
                 utils.crash();
+                break; // crash() above does not seem to work right away
             }
         }
     });

From 620bed73bb16804782ef109f4433edfdacbeab5f Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Tue, 27 Dec 2022 15:05:12 +0100
Subject: [PATCH 09/14] put back the removed widgets, the BC break is not worth
 it

---
 src/public/app/services/frontend_script_api.js | 18 ++++++++++++++++++
 src/services/hidden_subtree.js                 |  2 +-
 2 files changed, 19 insertions(+), 1 deletion(-)

diff --git a/src/public/app/services/frontend_script_api.js b/src/public/app/services/frontend_script_api.js
index 14b714ba2..5f89a9297 100644
--- a/src/public/app/services/frontend_script_api.js
+++ b/src/public/app/services/frontend_script_api.js
@@ -41,6 +41,24 @@ function FrontendScriptApi(startNote, currentNote, originEntity = null, $contain
     /** @property {NoteContextAwareWidget} */
     this.NoteContextAwareWidget = NoteContextAwareWidget;
 
+    /**
+     * @property {NoteContextAwareWidget}
+     * @deprecated use NoteContextAwareWidget instead
+     */
+    this.TabAwareWidget = NoteContextAwareWidget;
+
+    /**
+     * @property {NoteContextAwareWidget}
+     * @deprecated use NoteContextAwareWidget instead
+     */
+    this.TabCachingWidget = NoteContextAwareWidget;
+
+    /**
+     * @property {NoteContextAwareWidget}
+     * @deprecated use NoteContextAwareWidget instead
+     */
+    this.NoteContextCachingWidget = NoteContextAwareWidget;
+
     /** @property {BasicWidget} */
     this.BasicWidget = BasicWidget;
 
diff --git a/src/services/hidden_subtree.js b/src/services/hidden_subtree.js
index 2029c2fa2..a3113381d 100644
--- a/src/services/hidden_subtree.js
+++ b/src/services/hidden_subtree.js
@@ -308,7 +308,7 @@ function checkHiddenSubtreeRecursively(parentNoteId, item) {
     for (const attr of attrs) {
         const attrId = note.noteId + "_" + attr.type.charAt(0) + attr.name;
 
-        if (!note.getAttributes().find(attr => attr.attributeId === attrId)) {console.log("EEEEE");
+        if (!note.getAttributes().find(attr => attr.attributeId === attrId)) {
             new Attribute({
                 attributeId: attrId,
                 noteId: note.noteId,

From 0ddaa8f5c27a297c8bc8097d50b78db8895b9da3 Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Tue, 27 Dec 2022 21:17:40 +0100
Subject: [PATCH 10/14] migration fixes

---
 db/migrations/0198__randomize_branchIds.sql               | 7 -------
 db/migrations/0198__rename_branchIds.sql                  | 6 ++++++
 db/migrations/0202__move_global_note_map_under_hidden.sql | 2 +-
 src/becca/entities/branch.js                              | 4 ++++
 src/services/cloning.js                                   | 4 ++--
 src/services/consistency_checks.js                        | 2 +-
 src/services/hidden_subtree.js                            | 4 +++-
 src/services/migration.js                                 | 2 +-
 8 files changed, 18 insertions(+), 13 deletions(-)
 delete mode 100644 db/migrations/0198__randomize_branchIds.sql
 create mode 100644 db/migrations/0198__rename_branchIds.sql

diff --git a/db/migrations/0198__randomize_branchIds.sql b/db/migrations/0198__randomize_branchIds.sql
deleted file mode 100644
index 4e5a1bfe4..000000000
--- a/db/migrations/0198__randomize_branchIds.sql
+++ /dev/null
@@ -1,7 +0,0 @@
--- "randomize" branchIds so it's clear user should not rely on them
-UPDATE branches SET branchId = '7LSsI2FnZPW2' WHERE parentNoteId = 'hidden' AND noteId = 'search';
-UPDATE branches SET branchId = 'wEcmxk4CNC7G' WHERE parentNoteId = 'singles' AND noteId = 'globalnotemap';
-UPDATE branches SET branchId = '191uVR6Cu6fA' WHERE parentNoteId = 'hidden' AND noteId = 'sqlconsole';
-UPDATE branches SET branchId = 'OjX5Phxp6A4N' WHERE parentNoteId = 'root' AND noteId = 'hidden';
-UPDATE branches SET branchId = 'glNBYFYZRH8P' WHERE parentNoteId = 'hidden' AND noteId = 'bulkaction';
-UPDATE branches SET branchId = 'cAT25wvGMg3K' WHERE parentNoteId = 'root' AND noteId = 'share';
diff --git a/db/migrations/0198__rename_branchIds.sql b/db/migrations/0198__rename_branchIds.sql
new file mode 100644
index 000000000..3c6cd0e64
--- /dev/null
+++ b/db/migrations/0198__rename_branchIds.sql
@@ -0,0 +1,6 @@
+UPDATE branches SET branchId = '_hidden__search' WHERE parentNoteId = 'hidden' AND noteId = 'search';
+UPDATE branches SET branchId = 'root__globalNoteMap' WHERE parentNoteId = 'singles' AND noteId = 'globalnotemap';
+UPDATE branches SET branchId = '_hidden__sqlConsole' WHERE parentNoteId = 'hidden' AND noteId = 'sqlconsole';
+UPDATE branches SET branchId = 'root__hidden' WHERE parentNoteId = 'root' AND noteId = 'hidden';
+UPDATE branches SET branchId = '_hidden__bulkAction' WHERE parentNoteId = 'hidden' AND noteId = 'bulkaction';
+UPDATE branches SET branchId = '_hidden__share' WHERE parentNoteId = 'root' AND noteId = 'share';
diff --git a/db/migrations/0202__move_global_note_map_under_hidden.sql b/db/migrations/0202__move_global_note_map_under_hidden.sql
index 5c5f42812..0b634f69f 100644
--- a/db/migrations/0202__move_global_note_map_under_hidden.sql
+++ b/db/migrations/0202__move_global_note_map_under_hidden.sql
@@ -1,2 +1,2 @@
-DELETE FROM branches WHERE noteId = '_globalNoteMap' AND parentNoteId != 'singles'; -- make sure there are no clones which would fail at the next line
+DELETE FROM branches WHERE noteId = '_globalNoteMap' AND parentNoteId != 'singles' AND parentNoteId != '_hidden'; -- make sure there are no clones which would fail at the next line
 UPDATE branches SET parentNoteId = '_hidden' WHERE noteId = '_globalNoteMap';
diff --git a/src/becca/entities/branch.js b/src/becca/entities/branch.js
index 27f6babe9..cd647775e 100644
--- a/src/becca/entities/branch.js
+++ b/src/becca/entities/branch.js
@@ -232,6 +232,10 @@ class Branch extends AbstractEntity {
             this.isExpanded = false;
         }
 
+        if (!this.prefix?.trim()) {
+            this.prefix = null;
+        }
+
         this.utcDateModified = dateUtils.utcNowDateTime();
 
         super.beforeSaving();
diff --git a/src/services/cloning.js b/src/services/cloning.js
index 8f5952ca0..e7a977edf 100644
--- a/src/services/cloning.js
+++ b/src/services/cloning.js
@@ -78,14 +78,14 @@ function ensureNoteIsPresentInParent(noteId, parentNoteId, prefix) {
         return validationResult;
     }
 
-    new Branch({
+    const branch = new Branch({
         noteId: noteId,
         parentNoteId: parentNoteId,
         prefix: prefix,
         isExpanded: 0
     }).save();
 
-    log.info(`Ensured note '${noteId}' is in parent note '${parentNoteId}' with prefix '${prefix}'`);
+    log.info(`Ensured note '${noteId}' is in parent note '${parentNoteId}' with prefix '${branch.prefix}'`);
 
     return { success: true };
 }
diff --git a/src/services/consistency_checks.js b/src/services/consistency_checks.js
index 85e401da9..483048d19 100644
--- a/src/services/consistency_checks.js
+++ b/src/services/consistency_checks.js
@@ -296,7 +296,7 @@ class ConsistencyChecks {
                     for (const branch of branches.slice(1)) {
                         branch.markAsDeleted();
 
-                        logFix(`Removing branch '${branch.branchId}' since it's parent-child duplicate of branch '${origBranch.branchId}'`);
+                        logFix(`Removing branch '${branch.branchId}' since it's a parent-child duplicate of branch '${origBranch.branchId}'`);
                     }
 
                     this.reloadNeeded = true;
diff --git a/src/services/hidden_subtree.js b/src/services/hidden_subtree.js
index a3113381d..b6be8d619 100644
--- a/src/services/hidden_subtree.js
+++ b/src/services/hidden_subtree.js
@@ -244,7 +244,7 @@ function checkHiddenSubtreeRecursively(parentNoteId, item) {
     }
 
     let note = becca.notes[item.id];
-    let branch = becca.branches[item.id];
+    let branch;
 
     if (!note) {
         ({note, branch} = noteService.createNewNote({
@@ -255,6 +255,8 @@ function checkHiddenSubtreeRecursively(parentNoteId, item) {
             content: '',
             ignoreForbiddenParents: true
         }));
+    } else {
+        branch = note.getParentBranches().find(branch => branch.parentNoteId === parentNoteId);
     }
 
     const attrs = [...(item.attributes || [])];
diff --git a/src/services/migration.js b/src/services/migration.js
index f73b0f3e2..1bda273e4 100644
--- a/src/services/migration.js
+++ b/src/services/migration.js
@@ -22,7 +22,7 @@ async function migrate() {
     }
 
     fs.readdirSync(resourceDir.MIGRATIONS_DIR).forEach(file => {
-        const match = file.match(/([0-9]{4})__([a-zA-Z0-9_ ]+)\.(sql|js)/);
+        const match = file.match(/^([0-9]{4})__([a-zA-Z0-9_ ]+)\.(sql|js)$/);
 
         if (match) {
             const dbVersion = parseInt(match[1]);

From ff1f01be8ca58fe5a0a4d4dbbed9f93b535cb172 Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Wed, 28 Dec 2022 12:58:53 +0100
Subject: [PATCH 11/14] erase deleted notes in the migration

---
 db/migrations/0210__consistency_checks.js | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/db/migrations/0210__consistency_checks.js b/db/migrations/0210__consistency_checks.js
index f49fd0fd4..f3809fa06 100644
--- a/db/migrations/0210__consistency_checks.js
+++ b/db/migrations/0210__consistency_checks.js
@@ -3,8 +3,12 @@ module.exports = async () => {
     const beccaLoader = require("../../src/becca/becca_loader");
     const log = require("../../src/services/log");
     const consistencyChecks = require("../../src/services/consistency_checks");
+    const noteService = require("../../src/services/notes");
 
     await cls.init(async () => {
+        // precaution for the 0211 migration
+        noteService.eraseDeletedNotesNow();
+
         beccaLoader.load();
 
         try {

From f809da58ec9e161d4eb0e20c33633a9c6d9f47d6 Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Wed, 28 Dec 2022 13:09:49 +0100
Subject: [PATCH 12/14] fix occurrences of 'root' branch

---
 spec/search/search.spec.js          | 2 +-
 src/becca/becca_service.js          | 2 +-
 src/public/app/services/branches.js | 4 +++-
 src/public/app/widgets/note_tree.js | 2 +-
 src/routes/api/branches.js          | 4 ++--
 src/routes/api/tree.js              | 2 +-
 src/services/sql_init.js            | 1 -
 7 files changed, 9 insertions(+), 8 deletions(-)

diff --git a/spec/search/search.spec.js b/spec/search/search.spec.js
index ce826ed16..83eba56e7 100644
--- a/spec/search/search.spec.js
+++ b/spec/search/search.spec.js
@@ -13,7 +13,7 @@ describe("Search", () => {
         becca.reset();
 
         rootNote = new NoteBuilder(new Note({noteId: 'root', title: 'root', type: 'text'}));
-        new Branch({branchId: 'root', noteId: 'root', parentNoteId: 'none', notePosition: 10});
+        new Branch({branchId: 'none_root', noteId: 'root', parentNoteId: 'none', notePosition: 10});
     });
 
     it("simple path match", () => {
diff --git a/src/becca/becca_service.js b/src/becca/becca_service.js
index b96296bed..2cb924a5c 100644
--- a/src/becca/becca_service.js
+++ b/src/becca/becca_service.js
@@ -180,7 +180,7 @@ function getNotePath(noteId) {
         let branchId;
 
         if (note.isRoot()) {
-            branchId = 'root';
+            branchId = 'none_root';
         }
         else {
             const parentNote = note.parents[0];
diff --git a/src/public/app/services/branches.js b/src/public/app/services/branches.js
index 86eb96c08..b94c95b2a 100644
--- a/src/public/app/services/branches.js
+++ b/src/public/app/services/branches.js
@@ -10,7 +10,9 @@ async function moveBeforeBranch(branchIdsToMove, beforeBranchId) {
     branchIdsToMove = filterRootNote(branchIdsToMove);
     branchIdsToMove = filterSearchBranches(branchIdsToMove);
 
-    if (['root', '_lbRoot', '_lbAvailableLaunchers', '_lbVisibleLaunchers'].includes(beforeBranchId)) {
+    const beforeBranch = await froca.getBranch(beforeBranchId);
+
+    if (['root', '_lbRoot', '_lbAvailableLaunchers', '_lbVisibleLaunchers'].includes(beforeBranch.noteId)) {
         toastService.showError('Cannot move notes here.');
         return;
     }
diff --git a/src/public/app/widgets/note_tree.js b/src/public/app/widgets/note_tree.js
index 2381f2379..3fc6694a7 100644
--- a/src/public/app/widgets/note_tree.js
+++ b/src/public/app/widgets/note_tree.js
@@ -637,7 +637,7 @@ export default class NoteTreeWidget extends NoteContextAwareWidget {
     }
 
     prepareRootNode() {
-        return this.prepareNode(froca.getBranch('root'));
+        return this.prepareNode(froca.getBranch('none_root'));
     }
 
     /**
diff --git a/src/routes/api/branches.js b/src/routes/api/branches.js
index cb3f31b71..5bc8a3c70 100644
--- a/src/routes/api/branches.js
+++ b/src/routes/api/branches.js
@@ -143,7 +143,7 @@ function setExpanded(req) {
     const {branchId} = req.params;
     const expanded = parseInt(req.params.expanded);
 
-    if (branchId !== 'root') {
+    if (branchId !== 'none_root') {
         sql.execute("UPDATE branches SET isExpanded = ? WHERE branchId = ?", [expanded, branchId]);
         // we don't sync expanded label
         // also this does not trigger updates to the frontend, this would trigger too many reloads
@@ -172,7 +172,7 @@ function setExpandedForSubtree(req) {
         SELECT branchId FROM tree`, [branchId]);
 
     // root is always expanded
-    branchIds = branchIds.filter(branchId => branchId !== 'root');
+    branchIds = branchIds.filter(branchId => branchId !== 'none_root');
 
     sql.executeMany(`UPDATE branches SET isExpanded = ${expanded} WHERE branchId IN (???)`, branchIds);
 
diff --git a/src/routes/api/tree.js b/src/routes/api/tree.js
index 82b3ace04..3f9e386a3 100644
--- a/src/routes/api/tree.js
+++ b/src/routes/api/tree.js
@@ -66,7 +66,7 @@ function getNotesAndBranchesAndAttributes(noteIds) {
 
     if (noteIds.has('root')) {
         branches.push({
-            branchId: 'root',
+            branchId: 'none_root',
             noteId: 'root',
             parentNoteId: 'none',
             notePosition: 0,
diff --git a/src/services/sql_init.js b/src/services/sql_init.js
index 98c78317d..5ab8c3267 100644
--- a/src/services/sql_init.js
+++ b/src/services/sql_init.js
@@ -77,7 +77,6 @@ async function createInitialDatabase() {
         rootNote.setContent('');
 
         new Branch({
-            branchId: 'root',
             noteId: 'root',
             parentNoteId: 'none',
             isExpanded: true,

From d36cf47974cd8bc6bd45c1da774a9a55d45f998e Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Wed, 28 Dec 2022 23:17:59 +0100
Subject: [PATCH 13/14] no-dir npm scripts

---
 package.json | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/package.json b/package.json
index 6511ace5c..6bb433741 100644
--- a/package.json
+++ b/package.json
@@ -14,7 +14,9 @@
   },
   "scripts": {
     "start-server": "cross-env TRILIUM_DATA_DIR=./data TRILIUM_ENV=dev node ./src/www",
+    "start-server-no-dir": "cross-env TRILIUM_ENV=dev node ./src/www",
     "start-electron": "cross-env TRILIUM_DATA_DIR=./data TRILIUM_ENV=dev electron --inspect=5858 .",
+    "start-electron-no-dir": "cross-env TRILIUM_ENV=dev electron --inspect=5858 .",
     "switch-server": "rm -r ./node_modules/better-sqlite3 && npm install",
     "switch-electron": "rm -r ./node_modules/better-sqlite3 && npm install && ./node_modules/.bin/electron-rebuild",
     "build-backend-docs": "rm -r ./docs/backend_api && ./node_modules/.bin/jsdoc -c jsdoc-conf.json -d ./docs/backend_api src/becca/entities/*.js src/services/backend_script_api.js src/services/sql.js",

From f4cf04232fd301d4440e0ed52dc3bc3d4666a2a1 Mon Sep 17 00:00:00 2001
From: zadam <zadam.apps@gmail.com>
Date: Thu, 29 Dec 2022 00:12:54 +0100
Subject: [PATCH 14/14] release 0.58.2-beta

---
 package.json          | 2 +-
 src/services/build.js | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 6bb433741..957ca7b29 100644
--- a/package.json
+++ b/package.json
@@ -2,7 +2,7 @@
   "name": "trilium",
   "productName": "Trilium Notes",
   "description": "Trilium Notes",
-  "version": "0.58.1-beta",
+  "version": "0.58.2-beta",
   "license": "AGPL-3.0-only",
   "main": "electron.js",
   "bin": {
diff --git a/src/services/build.js b/src/services/build.js
index 66059373c..7461d1158 100644
--- a/src/services/build.js
+++ b/src/services/build.js
@@ -1 +1 @@
-module.exports = { buildDate:"2022-12-26T23:57:31+01:00", buildRevision: "7a8bbdced83c3bf906feec87b97aba4959ffa7bc" };
+module.exports = { buildDate:"2022-12-29T00:12:54+01:00", buildRevision: "d36cf47974cd8bc6bd45c1da774a9a55d45f998e" };